Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs149440953 chr4:70045962 C/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs149445203 chr20:29535125 G/T 2.08E-13 119 37.63 50.53 6 KM Plot
THYM rs149588357 chr8:50180190 C/T 2.69E-10 118 46.07 51.53 25.83 KM Plot
THYM rs149664217 chr6:151425900 G/A 0 118 37.63 55.1 4.13 KM Plot
THYM rs149834575 chr4:70103189 A/G 4.7E-13 119 41.77 35 6 KM Plot
THYM rs149908318 chr7:29722475 C/T 1.1E-12 115 38.13 46.27 6 KM Plot
THYM rs149919534 chr1:227396529 T/C 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs150014778 chr7:29675899 TGATA/T 3.95E-13 119 38.13 46.27 6 KM Plot
THYM rs150166008 chr1:22072946 A/AATAC 1.55E-13 119 42.25 39.4 6 KM Plot
THYM rs150423734 chr7:29713285 C/G 3.55E-13 119 37.63 48.18 6 KM Plot
THYM rs150427573 chr7:89733143 GTT/G 0.000147 114 41.22 32.7 69.07 KM Plot
THYM rs150525513 chr8:131736589 T/G 0 119 42.9 27.2 2.9 KM Plot
THYM rs150564049 chr2:30862842 AG/A 1.38E-8 119 36.03 50.13 33.13 KM Plot
THYM rs150630697 chr15:25883797 G/A 0.000122 119 41.22 39.58 28.43 KM Plot
THYM rs150690263 chr11:11815160 AAAATT/A 0.000177 118 40.67 42.9 13.35 KM Plot